https://pairef.fjfi.cvut.cz/dokuwiki/ 2026-04-09T23:46:31+00:00 https://pairef.fjfi.cvut.cz/dokuwiki/ https://pairef.fjfi.cvut.cz/dokuwiki/lib/exe/fetch.php?media=wiki:logo.png text/html 2024-11-18T09:08:32+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?id=start&rev=1731920912&do=diff Automatic PAIRed REFinement protocol THE WEBSITE HAS BEEN MOVED TO <https://pairef.structbio.org>. PLEASE CONTINUE THERE. PAIREF is a tool for macromolecular crystallographers that performs the PAIRed REFinement protocol automatically to estimate the optimal high-resolution cutoff. It is developed in Python and can be installed as a module into the text/html 2024-10-03T12:32:30+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?id=sidebar&rev=1727958750&do=diff * Homepage * Documentation * Installation * Using PAIREF * Graphical interface * Troubleshooting * Description of functions * Tests * Credits * Workshops * Struktura 2024: Python * CCP4SW 2024: Lunchtime Byte * CCP4SW 2023: Lunchtime Byte * Webinar: March 2021 * GitHub repository * PyPI repository text/html 2024-10-02T10:55:10+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?image=intro_python_southampton.pdf&ns=&rev=1727866510&tab_details=history&media_do=diff&do=media <img src="https://pairef.fjfi.cvut.cz/dokuwiki/lib/images/fileicons/svg/pdf.svg" alt="intro_python_southampton.pdf" loading="lazy" width="500" height="500" /> text/html 2024-09-16T08:24:47+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?image=intro_python_struktura2024.pdf&ns=&rev=1726475087&tab_details=history&media_do=diff&do=media <img src="https://pairef.fjfi.cvut.cz/dokuwiki/lib/images/fileicons/svg/pdf.svg" alt="intro_python_struktura2024.pdf" loading="lazy" width="500" height="500" /> text/html 2024-09-10T14:48:09+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?id=python_struktura2024&rev=1725979689&do=diff Crystallographic Python programming warm-up at Struktura 2024 <https://pairef.fjfi.cvut.cz/dokuwiki/lib/exe/fetch.php?media=intro_python_struktura2024.pdf> Download the materials in PDF text/html 2023-12-25T20:34:04+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?image=pairef_ccp4i2_poli_example_.png&ns=&rev=1703536444&tab_details=history&media_do=diff&do=media <img src="https://pairef.fjfi.cvut.cz/dokuwiki/lib/exe/fetch.php?w=500&amp;h=500&amp;tok=1ed8f5&amp;media=pairef_ccp4i2_poli_example_.png" alt="pairef_ccp4i2_poli_example_.png" loading="lazy" width="500" height="500" /> text/html 2023-12-25T20:29:45+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?id=lunchtime_byte_2024&rev=1703536185&do=diff PAIREF in CCP4 - CCP4SW Lunchtime Byte 2024 <https://pairef.fjfi.cvut.cz/docs/pairef_poli_ccp4sw2023/20230105_ccp4sw_pairef.pdf> Download presentation in PDF In this short tutorial, we submit a paired refinement job using the PAIREF program, now distributed in the CCP4 suite. You can use our example data from interferon gamma from Paralichthys olivaceus (POLI) , PDB entry text/html 2023-12-25T20:27:09+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?image=pairef_ccp4i2_poli_example.png&ns=&rev=1703536029&tab_details=history&media_do=diff&do=media <img src="https://pairef.fjfi.cvut.cz/dokuwiki/lib/exe/fetch.php?w=500&amp;h=500&amp;tok=4b9a4f&amp;media=pairef_ccp4i2_poli_example.png" alt="pairef_ccp4i2_poli_example.png" loading="lazy" width="500" height="500" /> text/html 2023-01-05T12:39:44+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?id=lunchtime_byte_2023&rev=1672922384&do=diff PAIREF in CCP4 - CCP4SW Lunchtime Byte 5th Jan 2023 <https://pairef.fjfi.cvut.cz/docs/pairef_poli_ccp4sw2023/20230105_ccp4sw_pairef.pdf> Download presentation in PDF In this short tutorial, we submit a paired refinement job using the PAIREF program, now distributed in the CCP4 suite. You can use our example data from interferon gamma from Paralichthys olivaceus (POLI) text/html 2022-12-22T09:10:21+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?image=ccp4.jpg&ns=&rev=1671700221&tab_details=history&media_do=diff&do=media <img src="https://pairef.fjfi.cvut.cz/dokuwiki/lib/exe/fetch.php?w=500&amp;h=500&amp;tok=16a830&amp;media=ccp4.jpg" alt="ccp4.jpg" loading="lazy" width="500" height="500" /> text/html 2022-12-22T08:58:57+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?image=pdf_icon.png&ns=&rev=1671699537&tab_details=history&media_do=diff&do=media <img src="https://pairef.fjfi.cvut.cz/dokuwiki/lib/exe/fetch.php?w=500&amp;h=500&amp;tok=293fe3&amp;media=pdf_icon.png" alt="pdf_icon.png" loading="lazy" width="500" height="500" /> text/html 2022-12-21T15:38:27+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?image=pairef_ccp4i2_dev.png&ns=&rev=1671637107&tab_details=history&media_do=diff&do=media <img src="https://pairef.fjfi.cvut.cz/dokuwiki/lib/exe/fetch.php?w=500&amp;h=500&amp;tok=883658&amp;media=pairef_ccp4i2_dev.png" alt="pairef_ccp4i2_dev.png" loading="lazy" width="500" height="500" /> text/html 2022-12-21T14:57:34+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?image=poli_ccp4sw2023_verdict_table.png&ns=&rev=1671634654&tab_details=history&media_do=diff&do=media <img src="https://pairef.fjfi.cvut.cz/dokuwiki/lib/exe/fetch.php?w=500&amp;h=500&amp;tok=323308&amp;media=poli_ccp4sw2023_verdict_table.png" alt="poli_ccp4sw2023_verdict_table.png" loading="lazy" width="500" height="500" /> text/html 2022-12-21T14:57:33+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?image=poli_ccp4sw2023_r-values.png&ns=&rev=1671634653&tab_details=history&media_do=diff&do=media <img src="https://pairef.fjfi.cvut.cz/dokuwiki/lib/exe/fetch.php?w=500&amp;h=500&amp;tok=601df1&amp;media=poli_ccp4sw2023_r-values.png" alt="poli_ccp4sw2023_r-values.png" loading="lazy" width="500" height="500" /> text/html 2022-12-21T14:57:33+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?image=poli_ccp4sw2023_rfree.png&ns=&rev=1671634653&tab_details=history&media_do=diff&do=media <img src="https://pairef.fjfi.cvut.cz/dokuwiki/lib/exe/fetch.php?w=500&amp;h=500&amp;tok=87de7b&amp;media=poli_ccp4sw2023_rfree.png" alt="poli_ccp4sw2023_rfree.png" loading="lazy" width="500" height="500" /> text/html 2022-12-21T14:57:33+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?image=poli_ccp4sw2023_ccwork.png&ns=&rev=1671634653&tab_details=history&media_do=diff&do=media <img src="https://pairef.fjfi.cvut.cz/dokuwiki/lib/exe/fetch.php?w=500&amp;h=500&amp;tok=0df9b7&amp;media=poli_ccp4sw2023_ccwork.png" alt="poli_ccp4sw2023_ccwork.png" loading="lazy" width="500" height="500" /> text/html 2021-08-18T12:49:07+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?image=2020-maly-iucrj-paired_refinement_under_the_control_of_pairef.pdf&ns=&rev=1629290947&tab_details=history&media_do=diff&do=media <img src="https://pairef.fjfi.cvut.cz/dokuwiki/lib/images/fileicons/svg/pdf.svg" alt="2020-maly-iucrj-paired_refinement_under_the_control_of_pairef.pdf" loading="lazy" width="500" height="500" /> text/html 2021-08-18T12:47:21+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?image=2021-maly-actaf.pdf&ns=&rev=1629290841&tab_details=history&media_do=diff&do=media <img src="https://pairef.fjfi.cvut.cz/dokuwiki/lib/images/fileicons/svg/pdf.svg" alt="2021-maly-actaf.pdf" loading="lazy" width="500" height="500" /> text/html 2021-03-24T10:06:42+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?image=pairef_webinar_2021-03_video.gif&ns=&rev=1616580402&tab_details=history&media_do=diff&do=media <img src="https://pairef.fjfi.cvut.cz/dokuwiki/lib/exe/fetch.php?w=500&amp;h=500&amp;tok=6699b0&amp;media=pairef_webinar_2021-03_video.gif" alt="pairef_webinar_2021-03_video.gif" loading="lazy" width="500" height="500" /> text/html 2021-03-18T11:15:27+00:00 maly (maly@undisclosed.example.com) https://pairef.fjfi.cvut.cz/dokuwiki/doku.php?image=pairef_webinar_2021_kolenko-1.pdf&ns=&rev=1616066127&tab_details=history&media_do=diff&do=media <img src="https://pairef.fjfi.cvut.cz/dokuwiki/lib/images/fileicons/svg/pdf.svg" alt="pairef_webinar_2021_kolenko-1.pdf" loading="lazy" width="500" height="500" />