Index

A

add_argument_with_check() (pairef.launcher.MyArgumentParser method)

C

calculate_correlation() (in module pairef.refinement) calculate_merging_stats() (in module pairef.preparation) check_non_negative_int() (in module pairef.launcher) check_positive_float() (in module pairef.launcher) check_positive_int() (in module pairef.launcher) check_refinement_software() (in module pairef.preparation) close() (pairef.preparation.output_log method) collect_stat_BINNED() (in module pairef.refinement) collect_stat_binned_phenix_high() (in module pairef.refinement)

collect_stat_binned_phenix_low() (in module pairef.refinement) collect_stat_binned_refmac_high() (in module pairef.refinement) collect_stat_binned_refmac_low() (in module pairef.refinement) collect_stat_OVERALL() (in module pairef.refinement) collect_stat_OVERALL_AVG() (in module pairef.refinement) collect_stat_overall_phenix() (in module pairef.refinement) collect_stat_overall_refmac() (in module pairef.refinement) collect_stat_write() (in module pairef.refinement) create_workdir() (in module pairef.preparation)

D

def_res_shells() (in module pairef.preparation)

E

error() (pairef.launcher.MyArgumentParser method)

extract_from_file() (in module pairef.commons)

F

flush() (pairef.preparation.output_log method)

fourdec() (in module pairef.commons)

M

main() (in module pairef.launcher) matplotlib_bar() (in module pairef.graphs)

matplotlib_line() (in module pairef.graphs) MyArgumentParser (class in pairef.launcher)

O

output_log (class in pairef.preparation)

P

pairef (module) pairef.commons (module) pairef.graphs (module)

pairef.launcher (module) pairef.preparation (module) pairef.refinement (module) process_arguments() (in module pairef.launcher)

R

refinement_phenix() (in module pairef.refinement) refinement_phenix_get_label() (in module pairef.refinement) refinement_refmac() (in module pairef.refinement) res_from_hklin_unmerged() (in module pairef.preparation) res_from_mtz() (in module pairef.preparation) res_high_from_xyzin() (in module pairef.preparation)

res_opt() (in module pairef.preparation) run_baverage() (in module pairef.preparation) run_bmean_iotbx() (in module pairef.preparation) run_pairef() (in module pairef) (in module pairef.launcher) run_pdbtools() (in module pairef.preparation)

T

try_symlink() (in module pairef.commons)

twodec() (in module pairef.commons) twodecname() (in module pairef.commons)

W

warning_my() (in module pairef.commons) welcome() (in module pairef.preparation)

which() (in module pairef.preparation) write() (pairef.preparation.output_log method) write_log_html() (in module pairef.graphs)

X

xticklabels_compress() (in module pairef.graphs)