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--- webinar_2021-03 [2021/03/19 15:55]
maly CC*
+++ webinar_2021-03 [2021/03/24 10:09] (current)
maly video
@@ Line 9: / Line 9: @@
   - Short tutorial. [[https://pairef.fjfi.cvut.cz/docs/pairef_poli_webinar/PAIREF_webinar_poli.zip|Download the archive with the data]].
   - Discussion.
+[[https://pairef.fjfi.cvut.cz/docs/pairef_poli_webinar/PAIREF_webinar_2021-03.pdf|Download these webinar instructions in PDF]]
+==== Video recording from the webinar ====
+[[https://pairef.fjfi.cvut.cz/docs/pairef_poli_webinar/PAIREF_webinar_23Mar2021_.mp4|{{ ::pairef_webinar_2021-03_video.gif |}}]]
 ===== Tutorial =====
@@ Line 23: / Line 30: @@
 {{:ccp4console.gif?nolink|}} {{:phenix_command_prompt.gif?nolink|}}
-Now execute the following command that installs PAIREF on your computer:
+Now execute the following commands that install PAIREF into CCP4 environment on your computer:
-<code>ccp4-python -m pip install pairef --no-deps --upgrade --user</code>
+<code>
+ccp4-python -m ensurepip --user
+ccp4-python -m pip install pairef --no-deps --upgrade --user
+</code>
 If the installation was not successful, please go through the section [[https://pairef.fjfi.cvut.cz/docs/installation.html#troubleshooting|Installation - Troubleshooting]] in our documentation.
@@ Line 86: / Line 96: @@
       2.10   2.00  49772   4021   12.38  98.51       0.3     0.1   16.989   17.721    4.963   0.027   0.008   0.2293
       2.00   1.90  35920   4046    8.88  81.18       0.1     0.0   41.435   43.993   14.417  -0.132  -0.016   N/A</code>
+===== Contact =====
+In case of any questions or problems, please do not hesitate and write us: [[martin.maly@fjfi.cvut.cz]].
+===== Further reading =====
+  * [[https://doi.org/10.1107/S2052252520005916|Paired refinement under the control of PAIREF. M. Maly, K. Diederichs, J. Dohnalek, P. Kolenko (2020) IUCrJ 7]]
+  * More information about //PAIREF// settings and possibilities are explained in the [[https://pairef.fjfi.cvut.cz/docs/|documentation]].
+  * Linking crystallographic model and data quality. P.A. Karplus & K. Diederichs (2012) Science 336:1030–3
+  * Assessing and maximizing data quality in macromolecular crystallography. P.A. Karplus & K. Diederichs (2015) Cur. Op. in Str. Biology 34:60–68
+  * Better models by discarding data? P.A. Karplus & K. Diederichs (2013) Acta Cryst. D59:1215–1222

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